A comprehensive Python package for interacting with the STRING database API through a Model Context Protocol (MCP) bridge.
STRINGmcp becomes available to MCP clients through the stringmcp mcp server. A comprehensive Python package for interacting with the STRING database API through a Model Context Protocol (MCP) bridge.
A comprehensive Python package for interacting with the STRING database API through a Model Context Protocol (MCP) bridge.
Once connected, the assistant can call these 2 tools directly:
Configuration — config = StringConfig( base_url="https://string-db.org/api", version_url="https://version-12-0.string-db.org/api", caller_identity="my_app", request_delay=1.0Summary — This comprehensive analysis demonstrates that the STRING-DB MCP bridge successfully: - Identified all 5 DNA repair proteins with detailed annotations -The server is distributed via PyPI as string-mcp, so most clients can run it without a manual build step. Add it to your MCP client's configuration and restart the client to pick it up — the copy-paste configs for Claude Desktop, Claude Code and Cursor are on this page.
Database servers turn schema archaeology and ad-hoc reporting into conversation, which is why they tend to be the second or third server people install. STRINGmcp sits in that group, and the shape of its toolset — Configuration, Summary — tells you what it is really for. Worth comparing against the other databases servers in this directory before you commit to one, since several overlap in scope but differ sharply in setup cost and permissions.
| Tool | What it does |
|---|---|
| Configuration | config = StringConfig( base_url="https://string-db.org/api", version_url="https://version-12-0.string-db.org/api", caller_identity="my_app", request_delay=1.0 # Delay between requests in seconds ) |
| Summary | This comprehensive analysis demonstrates that the STRING-DB MCP bridge successfully: - **Identified all 5 DNA repair proteins** with detailed annotations - **Discovered 10 high-confidence protein interactions** (all >0.8 |
## Claude config
```json
"mcpServers": {
"string-mcp": {
"command": "/path/to/python/env/bin/string-mcp-server",
"env": {}
}
}
}Configuration as documented by the project. Restart the client after saving.
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Official MongoDB server covering data, schemas and Atlas management — from find queries to spinning up clusters.
Serverless Postgres with database branching — point your assistant at Neon and let it work on disposable copies.