MCP-Slicer connects 3D Slicer with model clients like Claude Desktop or Cline through the Model Context Protocol (MCP), enabling direct interaction
MCP-Slicer connects 3D Slicer with model clients like Claude Desktop or Cline through the Model Context Protocol (MCP), enabling direct interaction and control of 3D Slicer. This integration allows for medical image processing, scene. That is what the mcp slicer mcp server brings to an AI assistant: the same capability, reachable through the Model Context Protocol rather than a separate app or dashboard.
Setup follows the usual MCP pattern — install or clone the server, register it in your client's configuration file, restart the client. The configuration blocks on this page cover the common clients.
The server publishes 1 tool. What each one is for:
Prerequisites — Otherwise installation instructions are on their website: Install uvPlenty of developer tooling servers cover similar ground. The differences that matter in practice are scope of access and how much setup stands between you and a working tool call. MCP Slicer's toolset — Prerequisites — is a fair guide to whether it matches your workflow. It is maintained by zhaoyouj; worth a glance at recent repository activity before you build anything load-bearing on it.
SyncDev reviews every entry in this directory against the project's own documentation before publishing, and revisits them as servers change.
| Tool | What it does |
|---|---|
| Prerequisites | Otherwise installation instructions are on their website: [Install uv](https://docs.astral.sh/uv/getting-started/installation/) |
### Cline Intergration
```json
{
"mcpServers": {
"slicer": {
"command": "uvx",
"args": ["mcp-slicer"]
}
}
}Configuration as documented by the project. Restart the client after saving.
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