Scanpy MCP Server

Natural language interface for scRNA-Seq analysis with Scanpy through MCP.

Local serverstdio

What is the Scanpy MCP Server?

Natural language interface for scRNA-Seq analysis with Scanpy through MCP.

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Maintainer setup documentation.

How to install the Scanpy MCP Server

claude mcp add scanpy -- uvx scanpy-mcp

Frequently asked questions

Natural language interface for scRNA-Seq analysis with Scanpy through MCP. Confirm the tools offered by your installed version in the connected client. Tool availability and permissions depend on the server and account configuration.