A comprehensive Model Context Protocol server for accessing Human Protein Atlas data including tissue expression, subcellular localization, pathology
Proteinatlas mcp server connects ProteinAtlas to AI assistants that speak the Model Context Protocol. A comprehensive Model Context Protocol server for accessing Human Protein Atlas data including tissue expression, subcellular localization, pathology data, and protein annotations.
A comprehensive Model Context Protocol (MCP) server for accessing Human Protein Atlas data, providing information about protein expression, subcellular localization, pathology, and more.
The Human Protein Atlas MCP Server enables seamless access to the vast repository of protein data from the Human Protein Atlas (https://www.proteinatlas.org). This server provides tools and resources for:
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Check the linked publisher documentation and your connected client's tool list. Names and availability can vary with the server version and account permissions.
| Tool | What it does |
|---|---|
| search_proteins | |
| get_protein_info | |
| get_protein_by_ensembl | |
| get_tissue_expression | |
| search_by_tissue | |
| get_blood_expression | |
| get_brain_expression | |
| get_subcellular_location | |
| search_by_subcellular_location | |
| get_pathology_data | |
| search_cancer_markers | |
| advanced_search | |
| batch_protein_lookup | |
| compare_expression_profiles |
{
"mcpServers": {
"proteinatlas": {
"command": "node",
"args": [
"/path/to/proteinatlas-server/build/index.js"
]
}
}
}From the project documentation. Replace placeholders and example paths before connecting.
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