GitHub repo: fzlzjerry/uniprot-mcp · PyPI package & command: uniprotkb-mcp (the Python import package is uniprot_mcp).
Uniprot Mcp is an MCP project maintained in the fzlzjerry/uniprot-mcp repository. The maintainer describes its purpose as “GitHub repo: fzlzjerry/uniprot-mcp · PyPI package & command: uniprotkb-mcp (the Python import package is uniprot_mcp)”. Read the project documentation for the complete scope.
The documented pypi package is uniprotkb-mcp. The configuration below comes from the maintainer’s example; adapt its paths and account values to your environment.
The example declares UNIPROT_MCP_CONTACT. Secret-looking values have been replaced with placeholders. Required and optional labels are shown only when the documentation states them.
Project documentation · Repository · Discovery listing. This profile records the public documentation checked on 2026-10-08.
Check the linked publisher documentation and your connected client's tool list. Names and availability can vary with the server version and account permissions.
| Tool | What it does |
|---|---|
| search_uniprotkb | Search UniProtKB with native query syntax. reviewed / organism_id filters are added for you. Summary, FASTA, or TSV output. |
| get_entry | One entry as a curated digest (function, names, organism, length, subcellular location, family/domains, key features, PTMs, keywords… |
| get_fasta | Raw FASTA for one accession or a batch. |
| map_ids | Convert ids across databases via UniProt's async ID-mapping (e.g. RefSeq_Protein→UniProtKB, UniProtKB_AC-ID→PDB). Returns mapped pairs and unmapped ids… |
| get_taxonomy | Resolve an organism name or taxon id → taxon id, names, rank, lineage. Turn "human" into organism_id:9606. |
| search_uniref | Search UniRef100/90/50 sequence-similarity clusters. |
| search_proteomes | Search proteomes (whole-organism protein sets); reference-proteome filter. |
{
"mcpServers": {
"uniprot": {
"command": "uvx",
"args": [
"uniprotkb-mcp"
],
"env": {
"UNIPROT_MCP_CONTACT": "you@example.org"
}
}
}
}From the project documentation. Replace placeholders and example paths before connecting.
| Variable | Description | Required |
|---|---|---|
| UNIPROT_MCP_CONTACT | Declared in the maintainer’s client configuration. | Check documentation |
Read, search and edit files inside allowed directories with the Model Context Protocol reference Filesystem server.
Retrieve version-aware library documentation and code examples with Context7 MCP, using resolve-library-id and query-docs.
Use Microsoft’s Playwright MCP server to navigate pages, inspect accessibility snapshots, fill forms and capture browser screenshots.
Connect GitHub MCP to repositories, issues and pull requests with GitHub’s hosted service or a locally run server.
Use the Supabase MCP server to inspect database schemas, query project data and retrieve docs through a project-scoped connection.
Search Linear issues and projects, inspect work context and manage updates through Linear’s hosted MCP server with OAuth.