How do I install the omics ai mcp server?

Use a recorded configuration for your client, replace example credential values and paths, and verify the documented runtime. Restart or reconnect the client, then inspect the available tools.

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Omics Ai MCP Server

Model Context Protocol (MCP) server for Omics AI Explorer - enables AI agents to conversationally query genomics data

Local serverstdioPython

What is the Omics Ai MCP Server?

Model Context Protocol (MCP) server for Omics AI Explorer - enables AI agents to conversationally query genomics data

What the server does

This MCP server wraps the functionality of the omics-ai-python-library to provide AI agents with seamless access to genomics data across multiple Omics AI Explorer networks including:

list_collections — - Discover available data collections in any network
list_tables — - Browse tables within specific collections
get_schema_fields — - Examine table schemas and field types
query_table — - Query data with filters, pagination, and ordering
count_rows — - Count rows matching specific criteria
sql_search — - Execute direct SQL queries using Trino syntax

More MCP options

Compare MCP servers by category, or browse hosted MCP servers if you prefer an endpoint over a local process.

Maintainer setup documentation.

Recorded tools

Check the linked publisher documentation and your connected client's tool list. Names and availability can vary with the server version and account permissions.

Tool	What it does
list_collections
list_tables
get_schema_fields
query_table
count_rows
sql_search

How to install the Omics Ai MCP Server

{
  "mcpServers": {
    "omics-ai": {
      "command": "node",
      "args": [
        "src/index.js"
      ],
      "cwd": "/path/to/omics-ai-mcp"
    }
  }
}

From the project documentation. Replace placeholders and example paths before connecting.

Example prompts to try

“Use Omics Ai MCP to list collections.”
“Use Omics Ai MCP to list tables.”
“Use Omics Ai MCP to get schema fields.”

Frequently asked questions

Model Context Protocol (MCP) server for Omics AI Explorer - enables AI agents to conversationally query genomics data Confirm the tools offered by your installed version in the connected client. Tool availability and permissions depend on the server and account configuration.