Liana MCP Server

Natural language interface for scRNA-Seq analysis with Liana through MCP.

Local serverstdio

What is the Liana MCP MCP server?

Liana MCP becomes available to MCP clients through the liana mcp mcp server. Natural language interface for scRNA-Seq analysis with Liana through MCP.

What Liana MCP does

Natural language interface for scRNA-Seq analysis with Liana through MCP.

Tools it exposes

Once connected, the assistant can call this tool directly:

  • Cell — cell communication method

Installing the liana mcp mcp server

The server is distributed via PyPI as liana-mcp, so most clients can run it without a manual build step. Add it to your MCP client's configuration and restart the client to pick it up — the copy-paste configs for Claude Desktop, Claude Code and Cursor are on this page.

Where it fits

Developer-tool servers are usually the first ones people connect, because they turn "help me with this code" into an assistant that can actually read the repo and act on it. Liana MCP sits in that group, and the shape of its toolset — Cell — tells you what it is really for. Worth comparing against the other developer tools servers in this directory before you commit to one, since several overlap in scope but differ sharply in setup cost and permissions.

Practical notes

  • This server runs locally, so it operates with whatever access your machine and its credentials already have. Scope that deliberately rather than by default.
  • Maintained by scmcphub.
  • MCP clients ask for confirmation before each tool call by default. Keep that on while you learn what the liana mcp mcp server actually does with your data.
  • Every entry in this directory is reviewed by hand before it goes live, and details are checked against the project's own documentation.

Available tools

ToolWhat it does
Cellcell communication method

How to install the Liana MCP MCP server

```
"mcpServers": {
  "liana-mcp": {
    "command": "/home/test/bin/liana-mcp",
    "args": [
      "run"
    ]
  }
}

Configuration as documented by the project. Restart the client after saving.

Example prompts to try

  • Use Liana MCP to Cell.

Frequently asked questions

It connects Liana MCP to MCP-compatible AI assistants such as Claude and Cursor, exposing 1 tool (Cell) that the assistant can call on your behalf. Instead of copying data back and forth by hand, the assistant works with Liana MCP directly.