Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) MCP Server

Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) is an MCP integration. MCP server for LC-MS data in mzML/mzMLb and Bruker timsTOF files; vendor formats via msconvert.

Packages and local setup

The published pypi package is labmcp-ms-data, version 0.1.1. Its declared MCP transport is stdio.

The package declares LABMCP_ADDRESS: Instrument address, e.g. serial:///dev/ttyUSB0 or tcp://192.168.1.50:5025; LABMCP_SIMULATE: Set to 1 to use the built-in simulator (no hardware); LABMCP_READ_ONLY: Set to 1 to disable all state-changing tools; LABMCP_LIMITS: Safety limit overrides, e.g. max_temperature_c=80.

Before connecting

Check the maintainer’s instructions for account access, authentication and the supported client configuration. Once connected, inspect the tools your client receives and try a small task that matches the server’s stated purpose. The registry description does not include a verified, complete tool list.

Project and source

View the publisher’s registry entry · Project repository · Project website. This profile uses version 0.1.1 from the registry. Registration identifies the publisher namespace; it does not establish that this is a first-party integration for every service it connects.

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