__Developed during [Bio x AI Hackathon 2025](https://bio-x-ai-berlin.devfolio.co/overview)__
Holy Bio MCP MCP server is a locally run integration for AI assistants that speak the Model Context Protocol. Developed during Bio x AI Hackathon 2025.
MCP is a protocol designed to bridge the gap between Large Language Models (LLMs) and specialized, domain-specific tools and databases. It provides a standardized way for AI assistants and agents to access complex functionalities through structured, type-safe interfaces.
Setup follows the usual MCP pattern — install or clone the server, register it in your client's configuration file, restart the client. The configuration blocks on this page cover the common clients.
You will need one environment variable: MCP_TRANSPORT. Keep credentials in your client's env block or a secrets manager rather than in a file you might commit.
Plenty of developer tooling servers cover similar ground. The differences that matter in practice are scope of access and how much setup stands between you and a working tool call. It is maintained by longevity-genie; worth a glance at recent repository activity before you build anything load-bearing on it.
We check each listing at SyncDev against the project's documentation before it goes live — if something here drifts out of date, it is a bug worth reporting.
{
"mcpServers": {
"biothings-mcp": {
"command": "uvx",
"args": ["--from", "biothings-mcp", "stdio"]
},
"gget-mcp": {
"command": "uvx",
"args": ["gget-mcp", "stdio"]
},
"synergy-age-mcp": {
"command": "uvx",
"args": ["synergy-age-mcp"],
"env": {
"MCP_TRANSPORT": "stdio"
}
},
"opengenes-mcp": {
"command": "uvx",
"args": ["opengenes-mcp"],
"env": {
"MCP_TRANSPORT": "stdio"
}
},
"pharmacology-mcp": {
"command": "uvx",
"args": ["--from", "pharmacology-mcp", "stdio"]
}
}
}Configuration as documented by the project. Restart the client after saving.
| Variable | Description | Required |
|---|---|---|
| MCP_TRANSPORT | Configuration value read at startup. | Optional |
Kill hallucinated APIs — version-accurate, up-to-date library documentation injected straight into context.
Microsoft's official browser automation server — drive a real browser through the accessibility tree, no screenshots needed.
GitHub's official server — repos, issues, pull requests, Actions and code security, straight from your assistant.
Issue tracking at the speed of conversation — Linear's official hosted server with OAuth and zero install.
Local repository surgery — status, diffs, commits, branches and history for any repo on disk.
Timezone sanity for AI — current time anywhere and correct conversions, without the model doing date math.