@cyanheads/pubchem-mcp-server
Pubchem-mcp-server source profile. From the maintainer documentation: “@cyanheads/pubchem-mcp-server”
The maintainer’s configuration uses https://pubchem.caseyjhand.com/mcp. It declares streamable-http transport. Check the project’s account and authentication instructions when adding the endpoint to your client.
Project documentation · Repository · Discovery listing. This profile records the public documentation checked on 2026-10-08.
Check the linked publisher documentation and your connected client's tool list. Names and availability can vary with the server version and account permissions.
| Tool | What it does |
|---|---|
| pubchem_search_compounds | Search for compounds by name, SMILES, InChIKey, formula, substructure, superstructure, or 2D similarity. |
| pubchem_get_compound_details | Get physicochemical properties, descriptions, synonyms, drug-likeness, and classification for compounds by CID. |
| pubchem_get_compound_image | Fetch a 2D structure diagram (PNG) for a compound by CID. |
| pubchem_get_compound_3d_structure | Fetch a 3D conformer (atomic coordinates and bonds) for a compound by CID, as parsed JSON or raw SDF. |
| pubchem_get_compound_xrefs | Get external database cross-references (PubMed, patents, genes, proteins, etc.). |
| pubchem_get_compound_safety | Get GHS hazard classification and safety data for one or more compounds by CID (batch). |
| pubchem_get_bioactivity | Get a compound's bioactivity profile: assay results, targets, and activity values; filter by outcome or molecular target. |
| pubchem_get_compound_interactions | Get drug-drug, drug-food, and chemical-target interactions for a compound by CID. |
| pubchem_search_assays | Find bioassays by biological target (gene symbol, protein, Gene ID, UniProt accession). |
| pubchem_get_summary | Get summaries for PubChem entities: assays, genes, proteins, taxonomy. |
{
"mcpServers": {
"pubchem-mcp-server": {
"type": "streamable-http",
"url": "https://pubchem.caseyjhand.com/mcp"
}
}
}From the project documentation. Replace placeholders and example paths before connecting.
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