A comprehensive Model Context Protocol server for accessing ChEMBL chemical database with 27 specialized tools for drug discovery, chemical
Chembl mcp server lets Claude, Cursor and other MCP clients work with ChEMBL directly. A comprehensive Model Context Protocol server for accessing ChEMBL chemical database with 27 specialized tools for drug discovery, chemical informatics, and bioactivity analysis.
A comprehensive Model Context Protocol (MCP) server providing advanced access to the ChEMBL chemical database. This server offers 22 specialized tools enabling AI assistants and MCP clients to perform sophisticated drug discovery research, chemical informatics analysis, and bioactivity investigations directly through ChEMBL's REST API.
This comprehensive ChEMBL MCP Server is developed by Augmented Nature, a leading innovator in AI-powered bioinformatics and computational chemistry solutions. Augmented Nature specializes in creating advanced tools that bridge the gap between artificial intelligence and chemical research, enabling researchers to unlock deeper insights from chemical and biological data.
Compare MCP servers by category, or browse hosted MCP servers if you prefer an endpoint over a local process.
Check the linked publisher documentation and your connected client's tool list. Names and availability can vary with the server version and account permissions.
| Tool | What it does |
|---|---|
| query | required): Target name or search query |
| limit | optional): Number of results to return (1-1000, default: 25) |
| offset | optional): Number of results to skip (default: 0) |
| chembl_id | required): ChEMBL compound ID (e.g., CHEMBL25) |
| target_type | optional): Target type filter (e.g., SINGLE PROTEIN, PROTEIN COMPLEX) |
| organism | optional): Organism filter |
| target_chembl_id | optional): ChEMBL target ID filter |
| assay_chembl_id | optional): ChEMBL assay ID filter |
| molecule_chembl_id | optional): ChEMBL compound ID filter |
| activity_type | optional): Activity type (e.g., IC50, Ki, EC50) |
| chembl_ids | required): Array of ChEMBL compound IDs (1-50) |
{
"mcpServers": {
"chembl": {
"command": "docker",
"args": [
"run",
"-i",
"chembl-mcp-server"
],
"env": {}
}
}
}From the project documentation. Replace placeholders and example paths before connecting.
Inspect PostgreSQL schemas and run read-only queries with the archived MCP reference server. Review its maintenance status before choosing it.
Connect the Notion MCP server to search workspace content and work with pages and databases through Notion’s hosted OAuth service.
Use the Supabase MCP server to inspect database schemas, query project data and retrieve docs through a project-scoped connection.
Query, modify and analyse local SQLite databases in conversation — the fastest way to chat with a data file.
Metabase ships its own MCP endpoint — search your BI content, build and run queries, and save questions and dashboards without leaving the chat.
Official MongoDB server covering data, schemas and Atlas management — from find queries to spinning up clusters.