Chatspatial MCP Server

ChatSpatial replaces ad-hoc LLM code generation with schema-enforced orchestration. Instead of generating arbitrary scripts, the LLM selects tools and

The tools it exposes

The server publishes 4 tools. What each one is for:

• Category — Example methods
• Visualization — Spatial plots, Embedding plots, Gene expression overlays
• Deconvolution — FlashDeconv, Cell2location, RCTD, DestVI, Stereoscope, SPOTlight, Tangram, CARD
• Guide — Use this when..

Getting it running

Setup follows the usual MCP pattern — install or clone the server, register it in your client's configuration file, restart the client.

How it compares

Things to watch

• It runs with your machine's permissions. That is convenient and also the reason to think about what you point it at before you approve a tool call.
• Keep per-call confirmation enabled while you learn its behaviour; it is the cheapest safeguard you have.

Setup and compatibility

This listing has no verified copy-paste launch configuration. Use the project documentation to confirm the entry point, runtime and authentication before registering it in your MCP client. A package name or repository alone is not a runnable configuration.

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