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Biomcp MCP Server

One binary. One grammar. Evidence from the biomedical sources you already trust.

Remote serverstreamable-httpPython

What is the Biomcp MCP Server?

One binary. One grammar. Evidence from the biomedical sources you already trust.

What the server does

BioMCP is one CLI binary over a single command grammar that reaches ~30 trusted biomedical sources (PubMed, ClinVar, ClinicalTrials.gov, OncoKB, Reactome, and more). It is also an MCP (Model Context Protocol) server, so the same tools are available to AI agents such as Claude Code, Codex, and Claude Desktop.

  • Search the literature: — search article fans out across PubTator3 and
  • Pivot without rework: — move from a gene, variant, drug, disease, pathway,
  • Choose a playbook: — biomcp skill list shows shipped worked examples
  • Analyze studies locally: — study commands cover local query, cohort, survival,
  • Follow the paper trail: — article citations, article references,
  • Enrich and batch: — use biomcp enrich for top-level g:Profiler

More MCP options

Compare MCP servers by category, or browse hosted MCP servers if you prefer an endpoint over a local process.

Maintainer setup documentation.

How to install the Biomcp MCP Server

{
  "mcpServers": {
    "biomcp": {
      "command": "biomcp",
      "args": [
        "serve"
      ]
    }
  }
}

From the project documentation. Replace placeholders and example paths before connecting.

Example prompts to try

  • “Use Biomcp to Homebrew.”

Frequently asked questions

One binary. One grammar. Evidence from the biomedical sources you already trust. Confirm the tools offered by your installed version in the connected client. Tool availability and permissions depend on the server and account configuration.

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