[Model Context Protocol](https://modelcontextprotocol.io/introduction) (MCP) is an open protocol that standardizes how applications provide context
Biomart MCP connects Biomart MCP to AI assistants that speak the Model Context Protocol. Model Context Protocol (MCP) is an open protocol that standardizes how applications provide context to LLMs developed by Anthropic. Here we use the MCP python-sdk to.
Model Context Protocol (MCP) is an open protocol that standardizes how applications provide context to LLMs developed by Anthropic. Here we use the MCP python-sdk to create a MCP server that interfaces with Biomart via the pybiomart package.
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{
"mcpServers": {
"Biomart": {
"command": "uv",
"args": [
"run",
"--with",
"mcp[cli]",
"--with",
"pybiomart",
"mcp",
"run",
"/your/path/to/biomart-mcp.py"
]
}
}
}From the project documentation. Replace placeholders and example paths before connecting.
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