An MCP server that enables AI assistants to run FastQC and MultiQC quality control analysis on sequencing data. Part of the [Bio-MCP
An MCP server that enables AI assistants to run FastQC and MultiQC quality control analysis on sequencing data. Part of the [Bio-MCP
Install FastQC and MultiQC: ```bash
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Check the linked publisher documentation and your connected client's tool list. Names and availability can vary with the server version and account permissions.
| Tool | What it does |
|---|---|
| fastqc_single_async | Queue single file analysis |
| fastqc_batch_async | Queue batch analysis |
| multiqc_report_async | Queue report generation |
| get_job_status | Check job progress |
| get_job_result | Retrieve completed results |
| cancel_job | Cancel running jobs |
| fastqc_single | |
| fastqc_batch | |
| multiqc_report |
{
"mcpServers": {
"bio-fastqc": {
"command": "python",
"args": [
"-m",
"src.server"
],
"cwd": "/path/to/bio-mcp-fastqc"
}
}
}From the project documentation. Replace placeholders and example paths before connecting.
Install FastQC and MultiQC: ```bash
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