Bio MCP Blast MCP Server

Enable AI assistants to perform BLAST searches through natural language. Search nucleotide and protein databases, create custom databases, and get

Local serverstdioPython

What is the Bio MCP Blast MCP Server?

Enable AI assistants to perform BLAST searches through natural language. Search nucleotide and protein databases, create custom databases, and get formatted results

More MCP options

Compare MCP servers by category, or browse hosted MCP servers if you prefer an endpoint over a local process.

Maintainer setup documentation.

Recorded tools

Check the linked publisher documentation and your connected client's tool list. Names and availability can vary with the server version and account permissions.

ToolWhat it does
blastn
blastp
makeblastdb

How to install the Bio MCP Blast MCP Server

{
  "mcpServers": {
    "bio-blast": {
      "command": "python",
      "args": [
        "-m",
        "src.server"
      ],
      "cwd": "/path/to/bio-mcp-blast"
    }
  }
}

From the project documentation. Replace placeholders and example paths before connecting.

Example prompts to try

  • “Use Bio MCP Blast to Installation.”
  • “Use Bio MCP Blast to Configuration.”
  • “Use Bio MCP Blast to blastn.”

Frequently asked questions

Enable AI assistants to perform BLAST searches through natural language. Search nucleotide and protein databases, create custom databases, and get formatted results Confirm the tools offered by your installed version in the connected client. Tool availability and permissions depend on the server and account configuration.