A comprehensive Model Context Protocol server for accessing AlphaFold Protein Structure Database with advanced protein structure prediction tools
A comprehensive Model Context Protocol server for accessing AlphaFold Protein Structure Database with advanced protein structure prediction tools
This MCP server enables seamless integration with AlphaFold's vast collection of protein structure predictions, offering tools for structure retrieval, confidence analysis, batch processing, and visualization preparation. Perfect for researchers, bioinformaticians, and structural biologists working with predicted protein structures.
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Check the linked publisher documentation and your connected client's tool list. Names and availability can vary with the server version and account permissions.
| Tool | What it does |
|---|---|
| get_structure | |
| download_structure | |
| check_availability | |
| search_structures | |
| list_by_organism | |
| get_organism_stats | |
| get_confidence_scores | |
| analyze_confidence_regions | |
| get_prediction_metadata | |
| batch_structure_info | |
| batch_download | |
| batch_confidence_analysis | |
| compare_structures | |
| find_similar_structures | |
| get_coverage_info | |
| validate_structure_quality | |
| export_for_pymol | |
| export_for_chimerax | |
| get_api_status |
{
"mcpServers": {
"alphafold-server": {
"command": "node",
"args": [
"/path/to/alphafold-server/build/index.js"
]
}
}
}From the project documentation. Replace placeholders and example paths before connecting.
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