An MCP (Model Context Protocol) server that provides access to AIND (Allen Institute for Neural Dynamics) metadata and data assets through a
Aind metadata mcp mcp server lets Claude, Cursor and other MCP clients work with Aind Metadata MCP directly. An MCP (Model Context Protocol) server that provides access to AIND (Allen Institute for Neural Dynamics) metadata and data assets through a comprehensive set of tools and resources.
An MCP (Model Context Protocol) server that provides access to AIND (Allen Institute for Neural Dynamics) metadata and data assets through a comprehensive set of tools and resources.
Once connected, the assistant can call this tool directly:
Aggregation — Execute complex MongoDB aggregation pipelinesThe server is distributed via PyPI as aind-metadata-mcp, so most clients can run it without a manual build step. Add it to your MCP client's configuration and restart the client to pick it up — the copy-paste configs for Claude Desktop, Claude Code and Cursor are on this page.
Database servers turn schema archaeology and ad-hoc reporting into conversation, which is why they tend to be the second or third server people install. Aind Metadata MCP sits in that group, and the shape of its toolset — Aggregation — tells you what it is really for. Worth comparing against the other databases servers in this directory before you commit to one, since several overlap in scope but differ sharply in setup cost and permissions.
| Tool | What it does |
|---|---|
| Aggregation | Execute complex MongoDB aggregation pipelines |
{
"mcpServers": {
"aind-metadata": {
"command": "uvx",
"args": ["aind-metadata-mcp"]
}
}
}Add to claude_desktop_config.json, then restart Claude Desktop.
Read-only SQL access to Postgres — let your assistant inspect schemas and answer questions from real data.
Manage your whole Supabase project in conversation — database, auth, storage, Edge Functions and branches.
Query, modify and analyse local SQLite databases in conversation — the fastest way to chat with a data file.
Metabase ships its own MCP endpoint — search your BI content, build and run queries, and save questions and dashboards without leaving the chat.
Official MongoDB server covering data, schemas and Atlas management — from find queries to spinning up clusters.
Serverless Postgres with database branching — point your assistant at Neon and let it work on disposable copies.